Motif J3_19545.2 Version J3_19545.2 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 1-12 | 2-7 | 3-6 | 3-7 | 4-5 | 7-11 | 9-10 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4V9F_006 | 4V9F | 0.1039 | 2 | 0 | LSU rRNA | U | 1412 | A | 1413 | A | 1414 | G | 1415 | * | C | 1680 | G | 1681 | A | 1682 | A | 1685 | C | 1686 | * | G | 1695 | U | 1696 | G | 1697 | cWW | tHS | tWW | cWW | tHW | cWW | |
| 2 | J3_8P9A_054 | 8P9A | 0.0000 | 2 | AR | LSU rRNA | G | 1488 | A | 1489 | A | 1490 | A | 1491 | * | U | 1837 | G | 1838 | A | 1839 | A | 1842 | C | 1843 | * | G | 1852 | U | 1853 | C | 1854 | cWW | tHS | ntWW | cWW | tHW | cWW | |
| 3 | J3_8CRE_014 | 8CRE | 0.0810 | 2 | 1 | LSU rRNA | G | 1484 | A | 1485 | A | 1486 | A | 1487 | * | U | 1833 | C | 1834 | A | 1835 | A | 1838 | C | 1839 | * | G | 1848 | U | 1849 | C | 1850 | cWW | ntHS | ntWW | cWW | tHW | cWW | |
| 4 | J3_5J7L_042 | 5J7L | 0.8796 | 2 | DA | LSU rRNA | C | 1306 | A | 1307 | A | 1308 | G | 1309 | * | C | 1605 | C | 1606 | C | 1607 | A | 1610 | C | 1611 | * | G | 1620 | U | 1621 | G | 1622 | cWW | ntHS | cWW | cWW | |||
| 5 | J3_8CRE_013 | 8CRE | 0.9816 | 2 | 1 | LSU rRNA | U | 1867 | C | 1868 | U | 1869 | A | 1870 | * | U | 1475 | G | 1476 | A | 1477 | U | 1480 | G | 1481 | * | C | 1853 | A | 1854 | A | 1855 | cWW | tWH | tHS | cWW | cWW | ||
| 6 | J3_8P9A_053 | 8P9A | 0.9778 | 2 | AR | LSU rRNA | U | 1871 | C | 1872 | U | 1873 | A | 1874 | * | U | 1479 | G | 1480 | A | 1481 | U | 1484 | G | 1485 | * | C | 1857 | A | 1858 | A | 1859 | cWW | ntWH | tHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAGUG*CAA*UCUA | 2 |
| UAAG*CGAGAAC*GUG | 1 |
| GAAA*UGAUAAC*GUC | 1 |
| GAAA*UCAUAAC*GUC | 1 |
| CAAG*CCCAAAC*GUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGU*A*CU | 2 |
| AA*GAGAA*U | 1 |
| AA*GAUAA*U | 1 |
| AA*CAUAA*U | 1 |
| AA*CCAAA*U | 1 |
- Annotations
-
- (6)
- Basepair signature
- cWW-F-F-tHS-cWW-cWW-F-F
- Heat map statistics
- Min 0.08 | Avg 0.55 | Max 1.00
Coloring options: