J3_1SM1_008

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1SM1_008 not in the Motif Atlas

Geometric match to J3_8VTW_008

Geometric discrepancy: 0.2534

The information below is about J3_8VTW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.4

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

1SM1|1|0|C|2496
1SM1|1|0|A|2497
1SM1|1|0|U|2498
1SM1|1|0|C|2499
*
1SM1|1|0|G|2524
1SM1|1|0|U|2525
1SM1|1|0|U|2526
*
1SM1|1|0|A|2540
1SM1|1|0|U|2541
1SM1|1|0|U|2542
1SM1|1|0|A|2543
1SM1|1|0|A|2544
1SM1|1|0|A|2545
1SM1|1|0|G|2546

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L14