Motif J3_32601.4 Version J3_32601.4 of this group appears in releases 3.87 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | break | 10 | 11 | 12 | 1-12 | 2-6 | 5-9 | 5-10 | 7-8 | 7-11 | 9-10 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_5J7L_046 | 5J7L | 0.1189 | 2 | DA | LSU rRNA | U | 2561 | U | 2562 | U | 2563 | A | 2564 | A | 2565 | A | 2566 | G | 2567 | * | C | 2517 | C | 2520 | * | G | 2545 | U | 2546 | A | 2547 | cWW | tWH | ncSs | tSs | cWW | cHW | cWW | |
| 2 | J3_4WF9_009 | 4WF9 | 0.0000 | 2 | X | LSU rRNA | A | 2588 | U | 2589 | U | 2590 | A | 2591 | A | 2592 | A | 2593 | G | 2594 | * | C | 2544 | C | 2547 | * | G | 2572 | U | 2573 | U | 2574 | cWW | tWH | tSs | cWW | cHW | cWW | ||
| 3 | J3_8VTW_008 | 8VTW | 0.1006 | 2 | 1A | LSU rRNA | A | 2561 | U | 2562 | U | 2563 | A | 2564 | A | 2565 | A | 2566 | G | 2567 | * | C | 2517 | C | 2520 | * | G | 2545 | U | 2546 | U | 2547 | cWW | tWH | ncSs | tSs | cWW | cHW | cWW | |
| 4 | J3_7A0S_011 | 7A0S | 0.1023 | 2 | X | LSU rRNA | A | 2540 | U | 2541 | U | 2542 | A | 2543 | A | 2544 | A | 2545 | G | 2546 | * | C | 2496 | C | 2499 | * | G | 2524 | U | 2525 | U | 2526 | cWW | tWH | tSs | cWW | cHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUC*GUU*AUUAAAG | 3 |
| CAUC*GUA*UUUAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*U*UUAAA | 4 |
- Annotations
- Basepair signature
- cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.09 | Max 0.18
Coloring options: