#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7break 8 9break 10 11 121-122-65-95-107-87-119-10
1 J3_7A0S_0117A0S0.10232X LSU rRNAA2540U2541U2542A2543A2544A2545G2546*C2496C2499*G2524U2525U2526cWWtWHtSscWWcHWcWW
2 J3_8VTW_0088VTW0.100621A LSU rRNAA2561U2562U2563A2564A2565A2566G2567*C2517C2520*G2545U2546U2547tWHcWWcWW
3 J3_4WF9_0094WF90.00002X LSU rRNAA2588U2589U2590A2591A2592A2593G2594*C2544C2547*G2572U2573U2574cWWtWHtSscWWcHWcWW
4 J3_5J7L_0465J7L0.11892DA LSU rRNAU2561U2562U2563A2564A2565A2566G2567*C2517C2520*G2545U2546A2547cWWtWHncSstSscWWcHWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAUC*GUU*AUUAAAG3
CAUC*GUA*UUUAAAG1
Non-Watson-Crick part of the motif
SequenceCounts
AU*U*UUAAA4

Release history

Release3.873.883.89
Date2024-08-142024-09-112024-10-09
StatusUpdated, 1 parentExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (4)
  • Basepair signature
    cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
    Heat map statistics
    Min 0.07 | Avg 0.09 | Max 0.18
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