J3_1SM1_011

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

UCGGGAC*GACAG*CA

Length

14 nucleotides

Bulged bases

1SM1|1|0|A|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1SM1_011 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.3756

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

1SM1|1|0|U|1357
1SM1|1|0|C|1358
1SM1|1|0|G|1359
1SM1|1|0|G|1360
1SM1|1|0|G|1361
1SM1|1|0|A|1362
1SM1|1|0|C|1363
*
1SM1|1|0|G|1394
1SM1|1|0|A|1395
1SM1|1|0|C|1396
1SM1|1|0|A|1397
1SM1|1|0|G|1398
*
1SM1|1|0|C|1415
1SM1|1|0|A|1416

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains