J3_1SM1_013
3D structure
- PDB id
- 1SM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.42 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAGAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 1SM1|1|0|A|490, 1SM1|1|0|A|491, 1SM1|1|0|G|492, 1SM1|1|0|G|514, 1SM1|1|0|A|517, 1SM1|1|0|A|518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1SM1_013 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.3926
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
1SM1|1|0|G|30
1SM1|1|0|C|31
*
1SM1|1|0|G|485
1SM1|1|0|U|486
1SM1|1|0|G|487
1SM1|1|0|A|488
1SM1|1|0|A|489
1SM1|1|0|A|490
1SM1|1|0|A|491
1SM1|1|0|G|492
1SM1|1|0|A|493
1SM1|1|0|A|494
1SM1|1|0|C|495
*
1SM1|1|0|G|506
1SM1|1|0|A|507
1SM1|1|0|G|508
1SM1|1|0|U|509
1SM1|1|0|G|510
1SM1|1|0|A|511
1SM1|1|0|A|512
1SM1|1|0|A|513
1SM1|1|0|G|514
1SM1|1|0|A|515
1SM1|1|0|G|516
1SM1|1|0|A|517
1SM1|1|0|A|518
1SM1|1|0|C|519
1SM1|1|0|C|520
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain O
- 50S RIBOSOMAL PROTEIN L20
- Chain Q
- 50S RIBOSOMAL PROTEIN L22
- Chain R
- 50S RIBOSOMAL PROTEIN L23
- Chain S
- 50S RIBOSOMAL PROTEIN L24
Coloring options: