J3_1UN6_003

3D structure

PDB id

1UN6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF A ZINC FINGER - RNA COMPLEX REVEALS TWO MODES OF MOLECULAR RECOGNITION

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCCACAC*GG*UGC

Length

12 nucleotides

Bulged bases

1UN6|1|E|A|11, 1UN6|1|E|C|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1UN6_003 not in the Motif Atlas

Geometric match to J3_7A0S_021

Geometric discrepancy: 0.37

The information below is about J3_7A0S_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47324.1

Basepair signature

cWW-F-F-tSS-F-F-cWW

Number of instances in this motif group

1

Unit IDs

1UN6|1|E|G|8
1UN6|1|E|C|9
1UN6|1|E|C|10
1UN6|1|E|A|11
1UN6|1|E|C|12
1UN6|1|E|A|13
1UN6|1|E|C|14
*
1UN6|1|E|G|65
1UN6|1|E|G|66
*
1UN6|1|E|U|109
1UN6|1|E|G|110
1UN6|1|E|C|111

Current chains

Chain E

5S RIBOSOMAL RNA

Nearby chains

Chain C

TRANSCRIPTION FACTOR IIIA