J3_1VQ4_006

3D structure

PDB id

1VQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DAA' bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UAAG*CGAGAAC*GUG

Length

14 nucleotides

Bulged bases

1VQ4|1|0|G|1683, 1VQ4|1|0|A|1684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VQ4_006 not in the Motif Atlas

Homologous match to J3_4V9F_006

Geometric discrepancy: 0.0265

The information below is about J3_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.1

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1VQ4|1|0|U|1412
1VQ4|1|0|A|1413
1VQ4|1|0|A|1414
1VQ4|1|0|G|1415
*
1VQ4|1|0|C|1680
1VQ4|1|0|G|1681
1VQ4|1|0|A|1682
1VQ4|1|0|G|1683
1VQ4|1|0|A|1684
1VQ4|1|0|A|1685
1VQ4|1|0|C|1686
*
1VQ4|1|0|G|1695
1VQ4|1|0|U|1696
1VQ4|1|0|G|1697

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain 2

50S ribosomal protein L39e

Chain P

50S ribosomal protein L19E