J3_1VQ5_007
3D structure
- PDB id
- 1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GCUG*CUCAC*GGACACC
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VQ5_007 not in the Motif Atlas
- Homologous match to J3_4V9F_007
- Geometric discrepancy: 0.0399
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97609.1
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
1VQ5|1|0|G|2131
1VQ5|1|0|C|2132
1VQ5|1|0|U|2133
1VQ5|1|0|G|2134
*
1VQ5|1|0|C|2241
1VQ5|1|0|U|2242
1VQ5|1|0|C|2243
1VQ5|1|0|A|2244
1VQ5|1|0|C|2245
*
1VQ5|1|0|G|2256
1VQ5|1|0|G|2257
1VQ5|1|0|A|2258
1VQ5|1|0|C|2259
1VQ5|1|0|A|2260
1VQ5|1|0|C|2261
1VQ5|1|0|C|2262
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain A
- 50S ribosomal protein L2P
- Chain M
- 50S Ribosomal Protein L15E
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