J3_1VQ7_020

3D structure

PDB id

1VQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CC*GUCGAU*AACAG

Length

13 nucleotides

Bulged bases

1VQ7|1|0|C|2850, 1VQ7|1|0|A|2852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VQ7_020 not in the Motif Atlas

Homologous match to J3_4V9F_019

Geometric discrepancy: 0.0972

The information below is about J3_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

1VQ7|1|0|C|2831
1VQ7|1|0|C|2832
*
1VQ7|1|0|G|2848
1VQ7|1|0|U|2849
1VQ7|1|0|C|2850
1VQ7|1|0|G|2851
1VQ7|1|0|A|2852
1VQ7|1|0|U|2853
*
1VQ7|1|0|A|2905
1VQ7|1|0|A|2906
1VQ7|1|0|C|2907
1VQ7|1|0|A|2908
1VQ7|1|0|G|2909

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain R

50S ribosomal protein L22P

Chain X

50S ribosomal protein L31e