J3_1VQ8_004
3D structure
- PDB id
- 1VQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.2 Å
Loop
- Sequence
- GGA*UCUAAGA*UAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VQ8_004 not in the Motif Atlas
- Homologous match to J3_4V9F_004
- Geometric discrepancy: 0.1643
- The information below is about J3_4V9F_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37832.1
- Basepair signature
- cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
1VQ8|1|0|G|1159
1VQ8|1|0|G|1160
1VQ8|1|0|A|1161
*
1VQ8|1|0|U|1185
1VQ8|1|0|C|1186
1VQ8|1|0|U|1187
1VQ8|1|0|A|1188
1VQ8|1|0|A|1189
1VQ8|1|0|G|1190
1VQ8|1|0|A|1191
*
1VQ8|1|0|U|1206
1VQ8|1|0|A|1207
1VQ8|1|0|C|1208
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain G
- ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG
- Chain I
- 50S RIBOSOMAL PROTEIN L11P
Coloring options: