J3_1VQ8_015
3D structure
- PDB id
- 1VQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.2 Å
Loop
- Sequence
- CC*GUCGAU*AACAG
- Length
- 13 nucleotides
- Bulged bases
- 1VQ8|1|0|C|2850, 1VQ8|1|0|A|2852
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VQ8_015 not in the Motif Atlas
- Homologous match to J3_4V9F_019
- Geometric discrepancy: 0.1709
- The information below is about J3_4V9F_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
1VQ8|1|0|C|2831
1VQ8|1|0|C|2832
*
1VQ8|1|0|G|2848
1VQ8|1|0|U|2849
1VQ8|1|0|C|2850
1VQ8|1|0|G|2851
1VQ8|1|0|A|2852
1VQ8|1|0|U|2853
*
1VQ8|1|0|A|2905
1VQ8|1|0|A|2906
1VQ8|1|0|C|2907
1VQ8|1|0|A|2908
1VQ8|1|0|G|2909
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain R
- 50S ribosomal protein L22P
- Chain X
- 50S ribosomal protein L31e
Coloring options: