J3_1VQ9_002
3D structure
- PDB id
- 1VQ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CGAUCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 1VQ9|1|0|U|777, 1VQ9|1|0|G|885
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VQ9_002 not in the Motif Atlas
- Homologous match to J3_4V9F_002
- Geometric discrepancy: 0.0414
- The information below is about J3_4V9F_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
1VQ9|1|0|C|774
1VQ9|1|0|G|775
1VQ9|1|0|A|776
1VQ9|1|0|U|777
1VQ9|1|0|C|778
1VQ9|1|0|U|779
1VQ9|1|0|A|780
*
1VQ9|1|0|U|866
1VQ9|1|0|A|867
1VQ9|1|0|G|868
*
1VQ9|1|0|C|884
1VQ9|1|0|G|885
1VQ9|1|0|A|886
1VQ9|1|0|G|887
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain 2
- 50S ribosomal protein L39e
- Chain A
- 50S ribosomal protein L2P
- Chain M
- 50S Ribosomal Protein L15E
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