J3_1VQ9_016
3D structure
- PDB id
- 1VQ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- UG*CUGCAAAGUACC*GAGGCGAAAUAGAGCA
- Length
- 30 nucleotides
- Bulged bases
- 1VQ9|1|0|U|510, 1VQ9|1|0|G|514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VQ9_016 not in the Motif Atlas
- Homologous match to J3_4V9F_012
- Geometric discrepancy: 0.0688
- The information below is about J3_4V9F_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24879.1
- Basepair signature
- cWW-cWW-cWS-tSH-F-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
1VQ9|1|0|U|27
1VQ9|1|0|G|28
*
1VQ9|1|0|C|480
1VQ9|1|0|U|481
1VQ9|1|0|G|482
1VQ9|1|0|C|483
1VQ9|1|0|A|484
1VQ9|1|0|A|485
1VQ9|1|0|A|486
1VQ9|1|0|G|487
1VQ9|1|0|U|488
1VQ9|1|0|A|489
1VQ9|1|0|C|490
1VQ9|1|0|C|491
*
1VQ9|1|0|G|501
1VQ9|1|0|A|502
1VQ9|1|0|G|503
1VQ9|1|0|G|504
1VQ9|1|0|C|505
1VQ9|1|0|G|506
1VQ9|1|0|A|507
1VQ9|1|0|A|508
1VQ9|1|0|A|509
1VQ9|1|0|U|510
1VQ9|1|0|A|511
1VQ9|1|0|G|512
1VQ9|1|0|A|513
1VQ9|1|0|G|514
1VQ9|1|0|C|515
1VQ9|1|0|A|516
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 2
- 50S ribosomal protein L39e
- Chain C
- 50S ribosomal protein L4E
- Chain R
- 50S ribosomal protein L22P
- Chain T
- 50S ribosomal protein L24P
Coloring options: