J3_1VQ9_018

3D structure

PDB id

1VQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

ACGAAG*CGUGAUACAG*CGUACU

Length

22 nucleotides

Bulged bases

1VQ9|1|0|U|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VQ9_018 not in the Motif Atlas

Homologous match to J3_4V9F_015

Geometric discrepancy: 0.0375

The information below is about J3_4V9F_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_59706.1

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-F-cSW-cWW-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

1VQ9|1|0|A|302
1VQ9|1|0|C|303
1VQ9|1|0|G|304
1VQ9|1|0|A|305
1VQ9|1|0|A|306
1VQ9|1|0|G|307
*
1VQ9|1|0|C|323
1VQ9|1|0|G|324
1VQ9|1|0|U|325
1VQ9|1|0|G|326
1VQ9|1|0|A|327
1VQ9|1|0|U|328
1VQ9|1|0|A|329
1VQ9|1|0|C|330
1VQ9|1|0|A|331
1VQ9|1|0|G|332
*
1VQ9|1|0|C|344
1VQ9|1|0|G|345
1VQ9|1|0|U|346
1VQ9|1|0|A|347
1VQ9|1|0|C|348
1VQ9|1|0|U|349

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain C

50S ribosomal protein L4E

Chain T

50S ribosomal protein L24P