J3_1VQK_006

3D structure

PDB id

1VQK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

UAAG*CGAGAAC*GUG

Length

14 nucleotides

Bulged bases

1VQK|1|0|G|1683, 1VQK|1|0|A|1684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VQK_006 not in the Motif Atlas

Homologous match to J3_4V9F_006

Geometric discrepancy: 0.038

The information below is about J3_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.1

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1VQK|1|0|U|1412
1VQK|1|0|A|1413
1VQK|1|0|A|1414
1VQK|1|0|G|1415
*
1VQK|1|0|C|1680
1VQK|1|0|G|1681
1VQK|1|0|A|1682
1VQK|1|0|G|1683
1VQK|1|0|A|1684
1VQK|1|0|A|1685
1VQK|1|0|C|1686
*
1VQK|1|0|G|1695
1VQK|1|0|U|1696
1VQK|1|0|G|1697

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain 2

50S ribosomal protein L39e