J3_1VQK_010
3D structure
- PDB id
- 1VQK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- CCACAG*CGUUC*GUUCG
- Length
- 16 nucleotides
- Bulged bases
- 1VQK|1|9|C|3012, 1VQK|1|9|C|3113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VQK_010 not in the Motif Atlas
- Homologous match to J3_4V9F_010
- Geometric discrepancy: 0.0467
- The information below is about J3_4V9F_010
- Detailed Annotation
- 5S rRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89737.1
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
1VQK|1|9|C|3009
1VQK|1|9|C|3010
1VQK|1|9|A|3011
1VQK|1|9|C|3012
1VQK|1|9|A|3013
1VQK|1|9|G|3014
*
1VQK|1|9|C|3067
1VQK|1|9|G|3068
1VQK|1|9|U|3069
1VQK|1|9|U|3070
1VQK|1|9|C|3071
*
1VQK|1|9|G|3110
1VQK|1|9|U|3111
1VQK|1|9|U|3112
1VQK|1|9|C|3113
1VQK|1|9|G|3114
Current chains
- Chain 9
- 5S ribosomal RNA
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 50S ribosomal protein L5P
- Chain N
- 50S ribosomal protein L18P
- Chain Q
- 50S ribosomal protein L21e
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