J3_1VQK_018
3D structure
- PDB id
- 1VQK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- ACGAAG*CGUGAUACAG*CGUACU
- Length
- 22 nucleotides
- Bulged bases
- 1VQK|1|0|U|328
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VQK_018 not in the Motif Atlas
- Homologous match to J3_4V9F_015
- Geometric discrepancy: 0.0292
- The information below is about J3_4V9F_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_59706.1
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-F-cSW-cWW-tHS-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
1VQK|1|0|A|302
1VQK|1|0|C|303
1VQK|1|0|G|304
1VQK|1|0|A|305
1VQK|1|0|A|306
1VQK|1|0|G|307
*
1VQK|1|0|C|323
1VQK|1|0|G|324
1VQK|1|0|U|325
1VQK|1|0|G|326
1VQK|1|0|A|327
1VQK|1|0|U|328
1VQK|1|0|A|329
1VQK|1|0|C|330
1VQK|1|0|A|331
1VQK|1|0|G|332
*
1VQK|1|0|C|344
1VQK|1|0|G|345
1VQK|1|0|U|346
1VQK|1|0|A|347
1VQK|1|0|C|348
1VQK|1|0|U|349
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain C
- 50S ribosomal protein L4E
- Chain T
- 50S ribosomal protein L24P
Coloring options: