J3_1VQM_008
3D structure
- PDB id
- 1VQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'DAN' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 1VQM|1|0|A|2368
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VQM_008 not in the Motif Atlas
- Homologous match to J3_4V9F_008
- Geometric discrepancy: 0.0499
- The information below is about J3_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
1VQM|1|0|C|2329
1VQM|1|0|U|2330
1VQM|1|0|C|2331
*
1VQM|1|0|G|2355
1VQM|1|0|A|2356
1VQM|1|0|G|2357
*
1VQM|1|0|C|2366
1VQM|1|0|A|2367
1VQM|1|0|A|2368
1VQM|1|0|A|2369
1VQM|1|0|A|2370
1VQM|1|0|G|2371
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 9
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 50S ribosomal protein L5P
- Chain N
- 50S ribosomal protein L18P
- Chain Q
- 50S ribosomal protein L21e
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