J3_1VQM_013
3D structure
- PDB id
- 1VQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'DAN' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- CCGGUC*GGAAA*UG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VQM_013 not in the Motif Atlas
- Homologous match to J3_4V9F_016
- Geometric discrepancy: 0.0696
- The information below is about J3_4V9F_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
1VQM|1|0|C|1450
1VQM|1|0|C|1451
1VQM|1|0|G|1452
1VQM|1|0|G|1453
1VQM|1|0|U|1454
1VQM|1|0|C|1455
*
1VQM|1|0|G|1490
1VQM|1|0|G|1491
1VQM|1|0|A|1492
1VQM|1|0|A|1493
1VQM|1|0|A|1494
*
1VQM|1|0|U|1511
1VQM|1|0|G|1512
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain 2
- 50S ribosomal protein L39e
- Chain S
- 50S ribosomal protein L23P
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