J3_1VQN_018

3D structure

PDB id

1VQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

ACGAAG*CGUGAUACAG*CGUACU

Length

22 nucleotides

Bulged bases

1VQN|1|0|U|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VQN_018 not in the Motif Atlas

Homologous match to J3_4V9F_015

Geometric discrepancy: 0.0301

The information below is about J3_4V9F_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_59706.1

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-F-cSW-cWW-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

1VQN|1|0|A|302
1VQN|1|0|C|303
1VQN|1|0|G|304
1VQN|1|0|A|305
1VQN|1|0|A|306
1VQN|1|0|G|307
*
1VQN|1|0|C|323
1VQN|1|0|G|324
1VQN|1|0|U|325
1VQN|1|0|G|326
1VQN|1|0|A|327
1VQN|1|0|U|328
1VQN|1|0|A|329
1VQN|1|0|C|330
1VQN|1|0|A|331
1VQN|1|0|G|332
*
1VQN|1|0|C|344
1VQN|1|0|G|345
1VQN|1|0|U|346
1VQN|1|0|A|347
1VQN|1|0|C|348
1VQN|1|0|U|349

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain C

50S ribosomal protein L4E

Chain T

50S ribosomal protein L24P