J3_1VQO_003

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

CAA*UGUUAG*CGUG

Length

13 nucleotides

Bulged bases

1VQO|1|0|U|825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VQO_003 not in the Motif Atlas

Homologous match to J3_4V9F_003

Geometric discrepancy: 0.0437

The information below is about J3_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

1VQO|1|0|C|789
1VQO|1|0|A|790
1VQO|1|0|A|791
*
1VQO|1|0|U|823
1VQO|1|0|G|824
1VQO|1|0|U|825
1VQO|1|0|U|826
1VQO|1|0|A|827
1VQO|1|0|G|828
*
1VQO|1|0|C|853
1VQO|1|0|G|854
1VQO|1|0|U|855
1VQO|1|0|G|856

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain A

50S ribosomal protein L2P

Chain P

50S ribosomal protein L19E

Chain Z

50S ribosomal protein L37Ae