3D structure

PDB id
1VQO (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.2 Å

Loop

Sequence
GCUG*CUCAC*GGACACC
Length
16 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1VQO_007 not in the Motif Atlas
Homologous match to J3_4V9F_007
Geometric discrepancy: 0.0514
The information below is about J3_4V9F_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_97609.1
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-F-cWW-F
Number of instances in this motif group
1

Unit IDs

1VQO|1|0|G|2131
1VQO|1|0|C|2132
1VQO|1|0|U|2133
1VQO|1|0|G|2134
*
1VQO|1|0|C|2241
1VQO|1|0|U|2242
1VQO|1|0|C|2243
1VQO|1|0|A|2244
1VQO|1|0|C|2245
*
1VQO|1|0|G|2256
1VQO|1|0|G|2257
1VQO|1|0|A|2258
1VQO|1|0|C|2259
1VQO|1|0|A|2260
1VQO|1|0|C|2261
1VQO|1|0|C|2262

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain A
50S ribosomal protein L2P
Chain M
50S Ribosomal Protein L15E

Coloring options:


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