J3_1VQO_013

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

CCGGUC*GGAAA*UG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VQO_013 not in the Motif Atlas

Homologous match to J3_4V9F_016

Geometric discrepancy: 0.0628

The information below is about J3_4V9F_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

1VQO|1|0|C|1450
1VQO|1|0|C|1451
1VQO|1|0|G|1452
1VQO|1|0|G|1453
1VQO|1|0|U|1454
1VQO|1|0|C|1455
*
1VQO|1|0|G|1490
1VQO|1|0|G|1491
1VQO|1|0|A|1492
1VQO|1|0|A|1493
1VQO|1|0|A|1494
*
1VQO|1|0|U|1511
1VQO|1|0|G|1512

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 2

50S ribosomal protein L39e

Chain S

50S ribosomal protein L23P