J3_1VQP_007

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

GCUG*CUCAC*GGACACC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VQP_007 not in the Motif Atlas

Homologous match to J3_4V9F_007

Geometric discrepancy: 0.0498

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86017.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

1VQP|1|0|G|2131
1VQP|1|0|C|2132
1VQP|1|0|U|2133
1VQP|1|0|G|2134
*
1VQP|1|0|C|2241
1VQP|1|0|U|2242
1VQP|1|0|C|2243
1VQP|1|0|A|2244
1VQP|1|0|C|2245
*
1VQP|1|0|G|2256
1VQP|1|0|G|2257
1VQP|1|0|A|2258
1VQP|1|0|C|2259
1VQP|1|0|A|2260
1VQP|1|0|C|2261
1VQP|1|0|C|2262

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain A

50S ribosomal protein L2P

Chain M

50S Ribosomal Protein L15E