J3_1VVJ_005

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VVJ_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.127

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

1VVJ|1|QA|C|936
1VVJ|1|QA|A|937
1VVJ|1|QA|A|938
1VVJ|1|QA|G|939
*
1VVJ|1|QA|C|1344
1VVJ|1|QA|U|1345
1VVJ|1|QA|A|1346
1VVJ|1|QA|G|1347
1VVJ|1|QA|U|1348
1VVJ|1|QA|A|1349
1VVJ|1|QA|A|1350
*
1VVJ|1|QA|U|1372
1VVJ|1|QA|G|1373
1VVJ|1|QA|A|1374
1VVJ|1|QA|A|1375
1VVJ|1|QA|U|1376
1VVJ|1|QA|A|1377
1VVJ|1|QA|C|1378
1VVJ|1|QA|G|1379

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QI

30S ribosomal protein S9