J3_1VVJ_015
3D structure
- PDB id
- 1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.44 Å
Loop
- Sequence
- AC*GAUAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 1VVJ|1|RA|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VVJ_015 not in the Motif Atlas
- Homologous match to J3_7RQB_002
- Geometric discrepancy: 0.1215
- The information below is about J3_7RQB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84625.2
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
1VVJ|1|RA|A|56
1VVJ|1|RA|C|57
*
1VVJ|1|RA|G|70
1VVJ|1|RA|A|71
1VVJ|1|RA|U|72
1VVJ|1|RA|A|73
1VVJ|1|RA|A|74
1VVJ|1|RA|G|75
1VVJ|1|RA|C|76
*
1VVJ|1|RA|G|110
1VVJ|1|RA|A|111
1VVJ|1|RA|U|112
1VVJ|1|RA|G|113
1VVJ|1|RA|U|114
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R2
- 50S ribosomal protein L29
- Chain R7
- 50S ribosomal protein L35
- Chain RX
- 50S ribosomal protein L23
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