J3_1VVJ_020

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VVJ_020 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.1057

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

1VVJ|1|RA|C|1298
1VVJ|1|RA|G|1299
1VVJ|1|RA|U|1300
1VVJ|1|RA|A|1301
1VVJ|1|RA|A|1302
1VVJ|1|RA|G|1303
*
1VVJ|1|RA|C|1625
1VVJ|1|RA|G|1626
1VVJ|1|RA|G|1627
*
1VVJ|1|RA|U|1639
1VVJ|1|RA|C|1640
1VVJ|1|RA|A|1641
1VVJ|1|RA|G|1642

Current chains

Chain RA

23S rRNA

Nearby chains