J3_1VVJ_022

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

1VVJ|1|RA|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VVJ_022 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1352

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

1VVJ|1|RA|G|1344
1VVJ|1|RA|C|1345
1VVJ|1|RA|G|1346
1VVJ|1|RA|G|1347
1VVJ|1|RA|G|1348
1VVJ|1|RA|A|1349
1VVJ|1|RA|C|1350
*
1VVJ|1|RA|G|1381
1VVJ|1|RA|G|1382
1VVJ|1|RA|C|1383
1VVJ|1|RA|A|1384
1VVJ|1|RA|G|1385
*
1VVJ|1|RA|C|1402
1VVJ|1|RA|C|1403

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L35