J3_1VVJ_062

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VVJ_062 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0757

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

1VVJ|1|RA|G|1424
1VVJ|1|RA|G|1425
1VVJ|1|RA|G|1426
1VVJ|1|RA|A|1427
1VVJ|1|RA|C|1428
1VVJ|1|RA|G|1429
*
1VVJ|1|RA|C|1564
1VVJ|1|RA|C|1565
*
1VVJ|1|RA|G|1568
1VVJ|1|RA|A|1569
1VVJ|1|RA|A|1570
1VVJ|1|RA|A|1571
1VVJ|1|RA|A|1572
1VVJ|1|RA|G|1573
1VVJ|1|RA|C|1574

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2