J3_9DFE_013

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9DFE|1|1A|G|1424
9DFE|1|1A|G|1425
9DFE|1|1A|G|1426
9DFE|1|1A|A|1427
9DFE|1|1A|C|1428
9DFE|1|1A|G|1429
*
9DFE|1|1A|C|1564
9DFE|1|1A|C|1565
*
9DFE|1|1A|G|1568
9DFE|1|1A|A|1569
9DFE|1|1A|A|1570
9DFE|1|1A|A|1571
9DFE|1|1A|A|1572
9DFE|1|1A|G|1573
9DFE|1|1A|C|1574

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2