3D structure

PDB id
1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.44 Å

Loop

Sequence
GCCUAAG*UAGGAAUCU*AGC
Length
19 nucleotides
Bulged bases
1VVJ|1|XA|C|48, 1VVJ|1|XA|A|50, 1VVJ|1|XA|A|51
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1VVJ_065 not in the Motif Atlas
Homologous match to J3_4LFB_014
Geometric discrepancy: 0.1189
The information below is about J3_4LFB_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46317.4
Basepair signature
cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

1VVJ|1|XA|G|46
1VVJ|1|XA|C|47
1VVJ|1|XA|C|48
1VVJ|1|XA|U|49
1VVJ|1|XA|A|50
1VVJ|1|XA|A|51
1VVJ|1|XA|G|52
*
1VVJ|1|XA|U|359
1VVJ|1|XA|A|360
1VVJ|1|XA|G|361
1VVJ|1|XA|G|362
1VVJ|1|XA|A|363
1VVJ|1|XA|A|364
1VVJ|1|XA|U|365
1VVJ|1|XA|C|366
1VVJ|1|XA|U|367
*
1VVJ|1|XA|A|393
1VVJ|1|XA|G|394
1VVJ|1|XA|C|395

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XL
30S ribosomal protein S12
Chain XP
30S ribosomal protein S16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2031 s