J3_1VVJ_065
3D structure
- PDB id
- 1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.44 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 1VVJ|1|XA|C|48, 1VVJ|1|XA|A|50, 1VVJ|1|XA|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VVJ_065 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.1189
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
1VVJ|1|XA|G|46
1VVJ|1|XA|C|47
1VVJ|1|XA|C|48
1VVJ|1|XA|U|49
1VVJ|1|XA|A|50
1VVJ|1|XA|A|51
1VVJ|1|XA|G|52
*
1VVJ|1|XA|U|359
1VVJ|1|XA|A|360
1VVJ|1|XA|G|361
1VVJ|1|XA|G|362
1VVJ|1|XA|A|363
1VVJ|1|XA|A|364
1VVJ|1|XA|U|365
1VVJ|1|XA|C|366
1VVJ|1|XA|U|367
*
1VVJ|1|XA|A|393
1VVJ|1|XA|G|394
1VVJ|1|XA|C|395
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XL
- 30S ribosomal protein S12
- Chain XP
- 30S ribosomal protein S16
Coloring options: