J3_1VVJ_065

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

1VVJ|1|XA|C|48, 1VVJ|1|XA|A|50, 1VVJ|1|XA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VVJ_065 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1189

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

1VVJ|1|XA|G|46
1VVJ|1|XA|C|47
1VVJ|1|XA|C|48
1VVJ|1|XA|U|49
1VVJ|1|XA|A|50
1VVJ|1|XA|A|51
1VVJ|1|XA|G|52
*
1VVJ|1|XA|U|359
1VVJ|1|XA|A|360
1VVJ|1|XA|G|361
1VVJ|1|XA|G|362
1VVJ|1|XA|A|363
1VVJ|1|XA|A|364
1VVJ|1|XA|U|365
1VVJ|1|XA|C|366
1VVJ|1|XA|U|367
*
1VVJ|1|XA|A|393
1VVJ|1|XA|G|394
1VVJ|1|XA|C|395

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XP

30S ribosomal protein S16