J3_1VW3_001

3D structure

PDB id

1VW3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUCUA*UAG*CUGG

Length

14 nucleotides

Bulged bases

1VW3|1|A|U|595, 1VW3|1|A|U|683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VW3_001 not in the Motif Atlas

Geometric match to J3_8VTW_001

Geometric discrepancy: 0.1477

The information below is about J3_8VTW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

1VW3|1|A|C|592
1VW3|1|A|G|593
1VW3|1|A|A|594
1VW3|1|A|U|595
1VW3|1|A|C|596
1VW3|1|A|U|597
1VW3|1|A|A|598
*
1VW3|1|A|U|664
1VW3|1|A|A|665
1VW3|1|A|G|666
*
1VW3|1|A|C|682
1VW3|1|A|U|683
1VW3|1|A|G|684
1VW3|1|A|G|685

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain B

54S ribosomal protein RML2, mitochondrial

Chain D

54S ribosomal protein YmL6, mitochondrial