#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6break 7 8 9break 10 111-112-93-56-79-10
1 J3_8VTW_0018VTW0.192531A LSU rRNAC683G684A685C687U688A689*U773A774G775*C791G794cWWtWHtSWcWWcWW
2 J3_7A0S_0047A0S0.14093X LSU rRNAU696G697A698C700U701A702*U786A787G788*C804A807cWWtWHtSWcWWcWW
3 J3_4V9F_0024V9F0.096330 LSU rRNAC774G775A776C778U779A780*U866A867G868*C884G887cWWtWHtSWcWWcWW
4 J3_5J7L_0385J7L0.07713DA LSU rRNAU683G684A685C687U688A689*U773G774G775*C791A794cWWtWHtSWcWWcWW
5 J3_8C3A_0038C3A0.066831 LSU rRNAU810G811A812C814U815A816*U901A902G903*C919A922cWWtWHtSWcWWcWW
6 J3_5TBW_0045TBW0.000031 LSU rRNAU814G815A816C818U819A820*U905A906G907*C923A926cWWtWHtSWcWWcWW
7 J3_4WF9_0024WF90.08753X LSU rRNAU728G729A730C732U733A734*U818A819G820*C836A839cWWtWHtSWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGAACUA*UAG*CGAA2
CGAGCUA*UAG*CGAG1
UGAGCUA*UAG*CGAA1
CGAUCUA*UAG*CGAG1
UGAUCUA*UGG*CAAA1
UGAUCUA*UAG*CGAA1
Non-Watson-Crick part of the motif
SequenceCounts
GAGCU*A*GA2
GAUCU*A*GA2
GAACU*A*GA2
GAUCU*G*AA1

Release history

Release3.873.883.89
Date2024-08-142024-09-112024-10-09
StatusUpdated, 1 parentExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (7)
  • Basepair signature
    cWW-tWH-cWW-tSW-F-F-cWW
    Heat map statistics
    Min 0.07 | Avg 0.11 | Max 0.21
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