J3_1VWW_003

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUGAAAAG*CGUGAAAC*GUGGAUCA

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|U|380
1VWW|1|5|U|381
1VWW|1|5|G|382
1VWW|1|5|A|383
1VWW|1|5|A|384
1VWW|1|5|A|385
1VWW|1|5|A|386
1VWW|1|5|G|387
*
1VWW|1|5|C|414
1VWW|1|5|G|415
1VWW|1|5|U|416
1VWW|1|5|G|417
1VWW|1|5|A|418
1VWW|1|5|A|419
1VWW|1|5|A|420
1VWW|1|5|C|421
*
1VWW|1|8|G|13
1VWW|1|8|U|14
1VWW|1|8|G|15
1VWW|1|8|G|16
1VWW|1|8|A|17
1VWW|1|8|U|18
1VWW|1|8|C|19
1VWW|1|8|A|20

Current chains

Chain 5

28S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains