J3_1VWW_004

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCGCAGUCCGCC*GGCGGUGC*GACGUCG

Length

28 nucleotides

Bulged bases

1VWW|1|5|G|703

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|C|447
1VWW|1|5|G|448
1VWW|1|5|C|449
1VWW|1|5|G|450
1VWW|1|5|C|451
1VWW|1|5|A|452
1VWW|1|5|G|453
1VWW|1|5|U|454
1VWW|1|5|C|455
1VWW|1|5|C|456
1VWW|1|5|G|457
1VWW|1|5|C|458
1VWW|1|5|C|459
*
1VWW|1|5|G|697
1VWW|1|5|G|698
1VWW|1|5|C|699
1VWW|1|5|G|700
1VWW|1|5|G|701
1VWW|1|5|U|702
1VWW|1|5|G|703
1VWW|1|5|C|704
*
1VWW|1|5|G|1293
1VWW|1|5|A|1294
1VWW|1|5|C|1295
1VWW|1|5|G|1296
1VWW|1|5|U|1297
1VWW|1|5|C|1298
1VWW|1|5|G|1299

Current chains

Chain 5

28S ribosomal RNA

Nearby chains