3D structure

PDB id
1VWW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CGCGCAGUCCGCC*GGCGGUGC*GACGUCG
Length
28 nucleotides
Bulged bases
1VWW|1|5|G|703
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

1VWW|1|5|C|447
1VWW|1|5|G|448
1VWW|1|5|C|449
1VWW|1|5|G|450
1VWW|1|5|C|451
1VWW|1|5|A|452
1VWW|1|5|G|453
1VWW|1|5|U|454
1VWW|1|5|C|455
1VWW|1|5|C|456
1VWW|1|5|G|457
1VWW|1|5|C|458
1VWW|1|5|C|459
*
1VWW|1|5|G|697
1VWW|1|5|G|698
1VWW|1|5|C|699
1VWW|1|5|G|700
1VWW|1|5|G|701
1VWW|1|5|U|702
1VWW|1|5|G|703
1VWW|1|5|C|704
*
1VWW|1|5|G|1293
1VWW|1|5|A|1294
1VWW|1|5|C|1295
1VWW|1|5|G|1296
1VWW|1|5|U|1297
1VWW|1|5|C|1298
1VWW|1|5|G|1299

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:

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