J3_1VWW_005

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCGCGACC*GAGGGAGCGAGACCCGUCGCCGCG*CGCACGGGGUCGGCGG

Length

48 nucleotides

Bulged bases

1VWW|1|5|C|962, 1VWW|1|5|G|965, 1VWW|1|5|U|971, 1VWW|1|5|G|1281, 1VWW|1|5|G|1284, 1VWW|1|5|G|1288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|C|706
1VWW|1|5|C|707
1VWW|1|5|G|708
1VWW|1|5|C|709
1VWW|1|5|G|710
1VWW|1|5|A|711
1VWW|1|5|C|712
1VWW|1|5|C|713
*
1VWW|1|5|G|955
1VWW|1|5|A|956
1VWW|1|5|G|957
1VWW|1|5|G|958
1VWW|1|5|G|959
1VWW|1|5|A|960
1VWW|1|5|G|961
1VWW|1|5|C|962
1VWW|1|5|G|963
1VWW|1|5|A|964
1VWW|1|5|G|965
1VWW|1|5|A|966
1VWW|1|5|C|967
1VWW|1|5|C|968
1VWW|1|5|C|969
1VWW|1|5|G|970
1VWW|1|5|U|971
1VWW|1|5|C|972
1VWW|1|5|G|973
1VWW|1|5|C|974
1VWW|1|5|C|975
1VWW|1|5|G|976
1VWW|1|5|C|977
1VWW|1|5|G|978
*
1VWW|1|5|C|1276
1VWW|1|5|G|1277
1VWW|1|5|C|1278
1VWW|1|5|A|1279
1VWW|1|5|C|1280
1VWW|1|5|G|1281
1VWW|1|5|G|1282
1VWW|1|5|G|1283
1VWW|1|5|G|1284
1VWW|1|5|U|1285
1VWW|1|5|C|1286
1VWW|1|5|G|1287
1VWW|1|5|G|1288
1VWW|1|5|C|1289
1VWW|1|5|G|1290
1VWW|1|5|G|1291

Current chains

Chain 5

28S ribosomal RNA

Nearby chains