J3_1VWW_005
3D structure
- PDB id
- 1VWW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCGCGACC*GAGGGAGCGAGACCCGUCGCCGCG*CGCACGGGGUCGGCGG
- Length
- 48 nucleotides
- Bulged bases
- 1VWW|1|5|C|962, 1VWW|1|5|G|965, 1VWW|1|5|U|971, 1VWW|1|5|G|1281, 1VWW|1|5|G|1284, 1VWW|1|5|G|1288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VWW|1|5|C|706
1VWW|1|5|C|707
1VWW|1|5|G|708
1VWW|1|5|C|709
1VWW|1|5|G|710
1VWW|1|5|A|711
1VWW|1|5|C|712
1VWW|1|5|C|713
*
1VWW|1|5|G|955
1VWW|1|5|A|956
1VWW|1|5|G|957
1VWW|1|5|G|958
1VWW|1|5|G|959
1VWW|1|5|A|960
1VWW|1|5|G|961
1VWW|1|5|C|962
1VWW|1|5|G|963
1VWW|1|5|A|964
1VWW|1|5|G|965
1VWW|1|5|A|966
1VWW|1|5|C|967
1VWW|1|5|C|968
1VWW|1|5|C|969
1VWW|1|5|G|970
1VWW|1|5|U|971
1VWW|1|5|C|972
1VWW|1|5|G|973
1VWW|1|5|C|974
1VWW|1|5|C|975
1VWW|1|5|G|976
1VWW|1|5|C|977
1VWW|1|5|G|978
*
1VWW|1|5|C|1276
1VWW|1|5|G|1277
1VWW|1|5|C|1278
1VWW|1|5|A|1279
1VWW|1|5|C|1280
1VWW|1|5|G|1281
1VWW|1|5|G|1282
1VWW|1|5|G|1283
1VWW|1|5|G|1284
1VWW|1|5|U|1285
1VWW|1|5|C|1286
1VWW|1|5|G|1287
1VWW|1|5|G|1288
1VWW|1|5|C|1289
1VWW|1|5|G|1290
1VWW|1|5|G|1291
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: