J3_1VWW_006

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGGUGAACUA*UAGGG*UAAUCGAACCA

Length

26 nucleotides

Bulged bases

1VWW|1|5|A|1534, 1VWW|1|5|G|1625, 1VWW|1|5|A|1638, 1VWW|1|5|G|1641, 1VWW|1|5|A|1642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|U|1528
1VWW|1|5|G|1529
1VWW|1|5|G|1530
1VWW|1|5|U|1531
1VWW|1|5|G|1532
1VWW|1|5|A|1533
1VWW|1|5|A|1534
1VWW|1|5|C|1535
1VWW|1|5|U|1536
1VWW|1|5|A|1537
*
1VWW|1|5|U|1622
1VWW|1|5|A|1623
1VWW|1|5|G|1624
1VWW|1|5|G|1625
1VWW|1|5|G|1626
*
1VWW|1|5|U|1636
1VWW|1|5|A|1637
1VWW|1|5|A|1638
1VWW|1|5|U|1639
1VWW|1|5|C|1640
1VWW|1|5|G|1641
1VWW|1|5|A|1642
1VWW|1|5|A|1643
1VWW|1|5|C|1644
1VWW|1|5|C|1645
1VWW|1|5|A|1646

Current chains

Chain 5

28S ribosomal RNA

Nearby chains