J3_1VWW_007

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCCUGGGCAG*CGUAGCG*CGUCCGACCUGGGUA

Length

33 nucleotides

Bulged bases

1VWW|1|5|A|1613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|U|1538
1VWW|1|5|G|1539
1VWW|1|5|C|1540
1VWW|1|5|C|1541
1VWW|1|5|U|1542
1VWW|1|5|G|1543
1VWW|1|5|G|1544
1VWW|1|5|G|1545
1VWW|1|5|C|1546
1VWW|1|5|A|1547
1VWW|1|5|G|1548
*
1VWW|1|5|C|1580
1VWW|1|5|G|1581
1VWW|1|5|U|1582
1VWW|1|5|A|1583
1VWW|1|5|G|1584
1VWW|1|5|C|1585
1VWW|1|5|G|1586
*
1VWW|1|5|C|1607
1VWW|1|5|G|1608
1VWW|1|5|U|1609
1VWW|1|5|C|1610
1VWW|1|5|C|1611
1VWW|1|5|G|1612
1VWW|1|5|A|1613
1VWW|1|5|C|1614
1VWW|1|5|C|1615
1VWW|1|5|U|1616
1VWW|1|5|G|1617
1VWW|1|5|G|1618
1VWW|1|5|G|1619
1VWW|1|5|U|1620
1VWW|1|5|A|1621

Current chains

Chain 5

28S ribosomal RNA

Nearby chains