J3_1VWW_008

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCGGUCC*GGGAGU*AA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|U|2440
1VWW|1|5|C|2441
1VWW|1|5|G|2442
1VWW|1|5|G|2443
1VWW|1|5|U|2444
1VWW|1|5|C|2445
1VWW|1|5|C|2446
*
1VWW|1|5|G|2514
1VWW|1|5|G|2515
1VWW|1|5|G|2516
1VWW|1|5|A|2517
1VWW|1|5|G|2518
1VWW|1|5|U|2519
*
1VWW|1|5|A|2536
1VWW|1|5|A|2537

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA