J3_1VWW_010

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGGAGAUGG*CCAGU*AGGGUGUAAAUCUCGC

Length

31 nucleotides

Bulged bases

1VWW|1|5|U|2554, 1VWW|1|5|C|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|G|2547
1VWW|1|5|C|2548
1VWW|1|5|G|2549
1VWW|1|5|G|2550
1VWW|1|5|A|2551
1VWW|1|5|G|2552
1VWW|1|5|A|2553
1VWW|1|5|U|2554
1VWW|1|5|G|2555
1VWW|1|5|G|2556
*
1VWW|1|5|C|2571
1VWW|1|5|C|2572
1VWW|1|5|A|2573
1VWW|1|5|G|2574
1VWW|1|5|U|2575
*
1VWW|1|5|A|2757
1VWW|1|5|G|2758
1VWW|1|5|G|2759
1VWW|1|5|G|2760
1VWW|1|5|U|2761
1VWW|1|5|G|2762
1VWW|1|5|U|2763
1VWW|1|5|A|2764
1VWW|1|5|A|2765
1VWW|1|5|A|2766
1VWW|1|5|U|2767
1VWW|1|5|C|2768
1VWW|1|5|U|2769
1VWW|1|5|C|2770
1VWW|1|5|G|2771
1VWW|1|5|C|2772

Current chains

Chain 5

28S ribosomal RNA

Nearby chains