J3_1VWW_012

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGCACGG*CUGACCCGGUGAGGC*GCUCCGGGGACAGUGCC

Length

39 nucleotides

Bulged bases

1VWW|1|5|G|4084, 1VWW|1|5|G|4086, 1VWW|1|5|G|4087, 1VWW|1|5|C|4162, 1VWW|1|5|U|4163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|G|3933
1VWW|1|5|G|3934
1VWW|1|5|C|3935
1VWW|1|5|A|3936
1VWW|1|5|C|3937
1VWW|1|5|G|3938
1VWW|1|5|G|3939
*
1VWW|1|5|C|4074
1VWW|1|5|U|4075
1VWW|1|5|G|4076
1VWW|1|5|A|4077
1VWW|1|5|C|4078
1VWW|1|5|C|4079
1VWW|1|5|C|4080
1VWW|1|5|G|4081
1VWW|1|5|G|4082
1VWW|1|5|U|4083
1VWW|1|5|G|4084
1VWW|1|5|A|4085
1VWW|1|5|G|4086
1VWW|1|5|G|4087
1VWW|1|5|C|4088
*
1VWW|1|5|G|4161
1VWW|1|5|C|4162
1VWW|1|5|U|4163
1VWW|1|5|C|4164
1VWW|1|5|C|4165
1VWW|1|5|G|4166
1VWW|1|5|G|4167
1VWW|1|5|G|4168
1VWW|1|5|G|4169
1VWW|1|5|A|4170
1VWW|1|5|C|4171
1VWW|1|5|A|4172
1VWW|1|5|G|4173
1VWW|1|5|U|4174
1VWW|1|5|G|4175
1VWW|1|5|C|4176
1VWW|1|5|C|4177

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA