J3_1VWW_013

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGG*CGCUUCUGGCGCCAAG*CGAC

Length

24 nucleotides

Bulged bases

1VWW|1|5|C|4116, 1VWW|1|5|U|4117, 1VWW|1|5|U|4118, 1VWW|1|5|C|4119, 1VWW|1|5|U|4120, 1VWW|1|5|G|4121, 1VWW|1|5|A|4157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VWW_013 not in the Motif Atlas

Geometric match to J3_8C3A_009

Geometric discrepancy: 0.3421

The information below is about J3_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02167.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

1VWW|1|5|G|4091
1VWW|1|5|G|4092
1VWW|1|5|G|4093
1VWW|1|5|G|4094
*
1VWW|1|5|C|4114
1VWW|1|5|G|4115
1VWW|1|5|C|4116
1VWW|1|5|U|4117
1VWW|1|5|U|4118
1VWW|1|5|C|4119
1VWW|1|5|U|4120
1VWW|1|5|G|4121
1VWW|1|5|G|4122
1VWW|1|5|C|4123
1VWW|1|5|G|4124
1VWW|1|5|C|4125
1VWW|1|5|C|4126
1VWW|1|5|A|4127
1VWW|1|5|A|4128
1VWW|1|5|G|4129
*
1VWW|1|5|C|4155
1VWW|1|5|G|4156
1VWW|1|5|A|4157
1VWW|1|5|C|4158

Current chains

Chain 5

28S ribosomal RNA

Nearby chains