J3_1VWW_015

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCGGUUG*CCUUCGUCCU*GUCACGCACGCCGUUCGUGG

Length

37 nucleotides

Bulged bases

1VWW|1|5|C|4883, 1VWW|1|5|C|4937, 1VWW|1|5|C|4939, 1VWW|1|5|C|4944, 1VWW|1|5|G|4945, 1VWW|1|5|G|4951

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|U|4748
1VWW|1|5|C|4749
1VWW|1|5|G|4750
1VWW|1|5|G|4751
1VWW|1|5|U|4752
1VWW|1|5|U|4753
1VWW|1|5|G|4754
*
1VWW|1|5|C|4879
1VWW|1|5|C|4880
1VWW|1|5|U|4881
1VWW|1|5|U|4882
1VWW|1|5|C|4883
1VWW|1|5|G|4884
1VWW|1|5|U|4885
1VWW|1|5|C|4886
1VWW|1|5|C|4887
1VWW|1|5|U|4888
*
1VWW|1|5|G|4931
1VWW|1|5|U|4932
1VWW|1|5|C|4933
1VWW|1|5|A|4934
1VWW|1|5|C|4935
1VWW|1|5|G|4936
1VWW|1|5|C|4937
1VWW|1|5|A|4938
1VWW|1|5|C|4939
1VWW|1|5|G|4941
1VWW|1|5|C|4942
1VWW|1|5|C|4944
1VWW|1|5|G|4945
1VWW|1|5|U|4946
1VWW|1|5|U|4947
1VWW|1|5|C|4948
1VWW|1|5|G|4949
1VWW|1|5|U|4950
1VWW|1|5|G|4951
1VWW|1|5|G|4952

Current chains

Chain 5

28S ribosomal RNA

Nearby chains