3D structure

PDB id
1VWW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CCAU*GCUUCUGGGU*ACACAAGGG
Length
23 nucleotides
Bulged bases
1VWW|1|5|C|4990, 1VWW|1|5|A|5061
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

1VWW|1|5|C|4969
1VWW|1|5|C|4970
1VWW|1|5|A|4971
1VWW|1|5|U|4972
*
1VWW|1|5|G|4986
1VWW|1|5|C|4987
1VWW|1|5|U|4988
1VWW|1|5|U|4989
1VWW|1|5|C|4990
1VWW|1|5|U|4991
1VWW|1|5|G|4992
1VWW|1|5|G|4993
1VWW|1|5|G|4994
1VWW|1|5|U|4995
*
1VWW|1|5|A|5056
1VWW|1|5|C|5057
1VWW|1|5|A|5058
1VWW|1|5|C|5059
1VWW|1|5|A|5060
1VWW|1|5|A|5061
1VWW|1|5|G|5062
1VWW|1|5|G|5063
1VWW|1|5|G|5064

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:

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