J3_1VWW_018

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCCAAG*CCCAGCCCGUGGAC*GGUAGCGG

Length

28 nucleotides

Bulged bases

1VWW|1|5|C|216, 1VWW|1|5|C|217, 1VWW|1|5|U|224, 1VWW|1|5|C|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|C|194
1VWW|1|5|C|195
1VWW|1|5|C|196
1VWW|1|5|A|197
1VWW|1|5|A|198
1VWW|1|5|G|199
*
1VWW|1|5|C|215
1VWW|1|5|C|216
1VWW|1|5|C|217
1VWW|1|5|A|218
1VWW|1|5|G|219
1VWW|1|5|C|220
1VWW|1|5|C|221
1VWW|1|5|C|222
1VWW|1|5|G|223
1VWW|1|5|U|224
1VWW|1|5|G|225
1VWW|1|5|G|226
1VWW|1|5|A|227
1VWW|1|5|C|228
*
1VWW|1|5|G|240
1VWW|1|5|G|241
1VWW|1|5|U|242
1VWW|1|5|A|243
1VWW|1|5|G|244
1VWW|1|5|C|245
1VWW|1|5|G|246
1VWW|1|5|G|247

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA