J3_1VWW_019

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUAGUCAACAAGUAC*GGAAAG*CUCG

Length

27 nucleotides

Bulged bases

1VWW|1|5|U|354, 1VWW|1|5|A|362, 1VWW|1|8|C|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VWW_019 not in the Motif Atlas

Geometric match to J3_8CRE_004

Geometric discrepancy: 0.1685

The information below is about J3_8CRE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

1VWW|1|5|C|351
1VWW|1|5|G|352
1VWW|1|5|A|353
1VWW|1|5|U|354
1VWW|1|5|A|355
1VWW|1|5|G|356
1VWW|1|5|U|357
1VWW|1|5|C|358
1VWW|1|5|A|359
1VWW|1|5|A|360
1VWW|1|5|C|361
1VWW|1|5|A|362
1VWW|1|5|A|363
1VWW|1|5|G|364
1VWW|1|5|U|365
1VWW|1|5|A|366
1VWW|1|5|C|367
*
1VWW|1|5|G|374
1VWW|1|5|G|375
1VWW|1|5|A|376
1VWW|1|5|A|377
1VWW|1|5|A|378
1VWW|1|5|G|379
*
1VWW|1|8|C|21
1VWW|1|8|U|22
1VWW|1|8|C|23
1VWW|1|8|G|24

Current chains

Chain 5

28S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains