J3_1VX2_004

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCCGGAC*GGGUG*UUAGAUGUC

Length

22 nucleotides

Bulged bases

1VX2|1|2|G|1507, 1VX2|1|2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|G|1270
1VX2|1|2|C|1271
1VX2|1|2|C|1272
1VX2|1|2|C|1273
1VX2|1|2|G|1274
1VX2|1|2|G|1275
1VX2|1|2|A|1276
1VX2|1|2|C|1277
*
1VX2|1|2|G|1320
1VX2|1|2|G|1321
1VX2|1|2|G|1322
1VX2|1|2|U|1323
1VX2|1|2|G|1324
*
1VX2|1|2|U|1504
1VX2|1|2|U|1505
1VX2|1|2|A|1506
1VX2|1|2|G|1507
1VX2|1|2|A|1508
1VX2|1|2|U|1509
1VX2|1|2|G|1510
1VX2|1|2|U|1511
1VX2|1|2|C|1512

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

Ribosomal protein eS10

Chain M

Ribosomal protein eS12

Chain P

Ribosomal protein uS19

Chain d

Ribosomal protein uS14

Chain f

Ribosomal protein eS31