J3_1VX2_006

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VX2_006 not in the Motif Atlas

Geometric match to J3_8P9A_068

Geometric discrepancy: 0.1732

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

1VX2|1|2|A|40
1VX2|1|2|G|41
*
1VX2|1|2|C|481
1VX2|1|2|G|482
1VX2|1|2|C|483
1VX2|1|2|A|484
1VX2|1|2|A|485
1VX2|1|2|A|486
1VX2|1|2|U|487
*
1VX2|1|2|A|512
1VX2|1|2|G|513
1VX2|1|2|U|514

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Ribosomal protein uS4

Chain X

Ribosomal protein uS12