J3_1VX2_008

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGGA*UUAAGAG*CAUUA

Length

16 nucleotides

Bulged bases

1VX2|1|2|G|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|U|682
1VX2|1|2|G|683
1VX2|1|2|G|684
1VX2|1|2|A|685
*
1VX2|1|2|U|917
1VX2|1|2|U|918
1VX2|1|2|A|919
1VX2|1|2|A|920
1VX2|1|2|G|921
1VX2|1|2|A|922
1VX2|1|2|G|923
*
1VX2|1|2|C|1019
1VX2|1|2|A|1020
1VX2|1|2|U|1021
1VX2|1|2|U|1022
1VX2|1|2|A|1023

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

Ribosomal protein eS7

Chain L

Ribosomal protein uS17

Chain N

Ribosomal protein uS15

Chain W

Ribosomal protein uS8

Chain X

Ribosomal protein uS12

Chain b

Ribosomal protein eS27