J3_1VX2_009
3D structure
- PDB id
- 1VX2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGACUGGCGAUGC*GGGCAGCUUCCG*CAAAGUCUUUGG
- Length
- 37 nucleotides
- Bulged bases
- 1VX2|1|2|C|1138, 1VX2|1|2|A|1150, 1VX2|1|2|C|1153, 1VX2|1|2|U|1155, 1VX2|1|2|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VX2|1|2|C|1091
1VX2|1|2|G|1092
1VX2|1|2|A|1093
1VX2|1|2|C|1094
1VX2|1|2|U|1095
1VX2|1|2|G|1096
1VX2|1|2|G|1097
1VX2|1|2|C|1098
1VX2|1|2|G|1099
1VX2|1|2|A|1100
1VX2|1|2|U|1101
1VX2|1|2|G|1102
1VX2|1|2|C|1103
*
1VX2|1|2|G|1129
1VX2|1|2|G|1130
1VX2|1|2|G|1131
1VX2|1|2|C|1132
1VX2|1|2|A|1133
1VX2|1|2|G|1134
1VX2|1|2|C|1135
1VX2|1|2|U|1136
1VX2|1|2|U|1137
1VX2|1|2|C|1138
1VX2|1|2|C|1139
1VX2|1|2|G|1140
*
1VX2|1|2|C|1147
1VX2|1|2|A|1148
1VX2|1|2|A|1149
1VX2|1|2|A|1150
1VX2|1|2|G|1151
1VX2|1|2|U|1152
1VX2|1|2|C|1153
1VX2|1|2|U|1154
1VX2|1|2|U|1155
1VX2|1|2|U|1156
1VX2|1|2|G|1157
1VX2|1|2|G|1158
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- Ribosomal protein uS2
- Chain B
- Ribosomal protein eS1
- Chain C
- Ribosomal protein uS5
- Chain L
- Ribosomal protein uS17
- Chain N
- Ribosomal protein uS15
- Chain R
- Ribosomal protein eS17
- Chain V
- Ribosomal protein eS21
- Chain W
- Ribosomal protein uS8
- Chain X
- Ribosomal protein uS12
- Chain a
- Ribosomal protein eS26
- Chain b
- Ribosomal protein eS27
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